I don't have a card reader to try with, but I would first do:
pi@raspberrypi ~ $ ls -al /dev | grep mmc
brw-rw---T 1 root floppy 179, 0 Dec 31 1969 mmcblk0
brw-rw---T 1 root floppy 179, 1 Dec 31 1969 mmcblk0p1
brw-rw---T 1 root floppy 179, 2 Nov 29 22:13 mmcblk0p2
lrwxrwxrwx 1 root root 9 Nov 29 22:13 root -> mmcblk0p2
pi@raspberrypi ~ $ pi
The SD card is on /dev/mmcblk0 . This is also verified by looking at /etc/fstab which mounts the file systems at boot.
pi@raspberrypi ~ $ cat /etc/fstab
proc /proc proc defaults 0 0
/dev/mmcblk0p1 /boot vfat defaults 0 2
/dev/mmcblk0p2 / ext4 defaults,noatime 0 1
pi@raspberrypi ~ $
Remove the card reader and look at the device file system and see what disappears.
Put the card reader back in and see which device reappears.
Update
pi@raspberrypi ~ $ cd
pi@raspberrypi ~ $ ls /dev > before.txt
pi@raspberrypi ~ $ #plug in the usb reader with the SD card
pi@raspberrypi ~ $ ls /dev > after.txt
pi@raspberrypi ~ $ diff -C 2 before.txt after.txt
*** before.txt 2012-12-01 13:29:58.234244009 -0500
--- after.txt 2012-12-01 13:31:04.313366798 -0500
***************
*** 56,59 ****
--- 56,62 ----
raw
root
+ sda
+ sda1
+ sda2
shm
snd
***************
*** 134,137 ****
--- 137,141 ----
usbdev1.2
usbdev1.3
+ usbdev1.4
vchiq
vc-mem
pi@raspberrypi ~ $ lsusb
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 001 Device 002: ID 0424:9512 Standard Microsystems Corp.
Bus 001 Device 003: ID 0424:ec00 Standard Microsystems Corp.
Bus 001 Device 004: ID 058f:6366 Alcor Micro Corp. Multi Flash Reader
pi@raspberrypi ~ $
This is showing that usbdev1.4 was added - the card reader. Also /dev/sda /dev/sda1 /dev/sda2 .
This is a second RPI card (not the running one) in the reader so it has two partitions mounted from /dev/sda1 and /dev/sda2 .
pi@raspberrypi ~ $ df -k
Filesystem 1K-blocks Used Available Use% Mounted on
rootfs 1804128 1685924 26556 99% /
/dev/root 1804128 1685924 26556 99% /
devtmpfs 224436 0 224436 0% /dev
tmpfs 44900 228 44672 1% /run
tmpfs 5120 0 5120 0% /run/lock
tmpfs 89780 0 89780 0% /run/shm
/dev/mmcblk0p1 57288 16896 40392 30% /boot
/dev/sda1 57288 16920 40368 30% /media/8B12-9112
/dev/sda2 1804128 1256004 456476 74% /media/29b6c2f5-5469-49f2-abd5-daa9149021cc
pi@raspberrypi ~ $
The mount points for the partitions show up on the right.
pi@raspberrypi ~ $ cd /media/8B12-9112/
pi@raspberrypi /media/8B12-9112 $ ls
bootcode.bin fixup_cd.dat kernel_cutdown.img start_cd.elf
cmdline.txt fixup.dat kernel_emergency.img start.elf
config.txt issue.txt kernel.img
pi@raspberrypi /media/8B12-9112 $