When using RPi 2 via remote internet connection, is there any harm in using both PuTTY and VNC (tightvncserver) at the same time?

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    Other than using PuTTY (which implies Windows ;-) No. I use ssh and vnc simultaneously from OS X. – Milliways Jan 11 '16 at 9:25

There will be no issues.

Linux is a fully multi-tasked environment. See multitasking at linfo and howtogeek

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