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Is there any way to hibernate the raspberry pi and wake it up periodically without any physical contact but only controls through the GPIO pins?

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  • Shut it down, yes. But how do you plan to wake it up by GPIO when it is off?
    – Bex
    Commented Apr 5, 2017 at 16:43

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There NO way to hibernate the Raspberry Pi.

It is either running or not. You can poweroff which leaves the Graphics Core running, but you need to restart.

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